From owner-pronto@crc.dk Wed Sep 9 21:21:11 1998 Received: (from majordomo@localhost) by mail.crc.dk (8.9.0/8.9.0) id VAA29659 for pronto-list; Wed, 9 Sep 1998 21:21:11 +0200 X-Authentication-Warning: mail.crc.dk: majordomo set sender to owner-pronto@crc.dk using -f Received: from crc.dk (k020-03.crc.dk [130.226.182.195]) by mail.crc.dk (8.9.0/8.9.0) with ESMTP id VAA29586; Wed, 9 Sep 1998 21:21:02 +0200 Message-ID: <35F6D5C8.CD3AF783@crc.dk> Date: Wed, 09 Sep 1998 21:23:52 +0200 From: Mogens Kjaer Organization: Carlsberg Laboratory X-Mailer: Mozilla 4.5b1 [en] (X11; I; Linux 2.0.31 i586) X-Accept-Language: en MIME-Version: 1.0 To: pronto@crc.dk Subject: Re: Help needed: no contours References: <199809091907.VAA29418@mail.crc.dk> Content-Type: text/plain; charset=us-ascii Content-Transfer-Encoding: 7bit Sender: owner-pronto@crc.dk Precedence: bulk [Hm, this message never made it to the list; the majordomo message handler thought it was sent to the wrong address because line 4 starts with the word "help" - sic!] John Tomaszewski wrote: > To anyone out there, > I've just gotten started using pronto (I have it set up and > licensed on the SGIs at school and Linux at home) and need a bit of > help: > > 1) After reading in a referenced, Felix .mat file (it normalized OK, so I'm > pretty sure Pronto can read the file), and filling in the sequence, I > can't get any contours to show in the CP facility. I've used the > standard values shown in the online manual, as well as several > variations, but the CP window consistantly comes up blank. If anyone's > willing to help I can go into a lot more detail if necessary. Is this both in Linux and on the SGI's? Is the .mat file compressed? > > 2) I want to be able to share my database, as well as my Felix .mat files > between the two machines (big Endian <-> little Endian). I understand > that the database can be shared by exporting as ASCII on one machine and > importing on the other. Is there more to it? I haven't tried it yet due > to the bottleneck mentioned in 1). Also, what about the .mat file(s)? > What, if anything, must be done with those? Pronto should in general be able to convert spectra on-the-fly between the two endianness, however, there might be a problem with Felix files, this depends upon the answer of question 1. The same is not possible for the database files, unfortunately. There you would have to go the ASCII way. > > Any help would be greatly appreciated. > > Sincerely, > > John T. > > ******************************************************************** > ** ** ** ** * ** DEPARTMENT OF CHEMISTRY ** > ** ** ** ** * ** tomasz@protein.chem.washington.edu ** > ** ** ** ** * ** (206) 616-2993 ** > ** ***** ***** JOHN TOMASZEWSKI ** > ******************************************************************** Mogens -- Mogens Kjaer, Carlsberg Laboratory, Dept. of Chemistry Gamle Carlsberg Vej 10, DK-2500 Valby, Denmark Phone: +45 33 27 53 25, Fax: +45 33 27 47 08 Email: mk@crc.dk Homepage: http://www.crc.dk From owner-pronto@crc.dk Wed Sep 9 21:23:35 1998 Received: (from majordomo@localhost) by mail.crc.dk (8.9.0/8.9.0) id VAA29853 for pronto-list; Wed, 9 Sep 1998 21:23:35 +0200 X-Authentication-Warning: mail.crc.dk: majordomo set sender to owner-pronto@crc.dk using -f Received: from crc.dk (k020-03.crc.dk [130.226.182.195]) by mail.crc.dk (8.9.0/8.9.0) with ESMTP id VAA29779; Wed, 9 Sep 1998 21:23:27 +0200 Message-ID: <35F6D659.AC4B7673@crc.dk> Date: Wed, 09 Sep 1998 21:26:17 +0200 From: Mogens Kjaer Organization: Carlsberg Laboratory X-Mailer: Mozilla 4.5b1 [en] (X11; I; Linux 2.0.31 i586) X-Accept-Language: en MIME-Version: 1.0 To: pronto@crc.dk Subject: Re: Help needed: no contours Content-Type: text/plain; charset=us-ascii Content-Transfer-Encoding: 7bit Sender: owner-pronto@crc.dk Precedence: bulk [Hm, this message never made it to the list; the majordomo message handler thought it was sent to the wrong address because line 4 starts with the word "help" - sic!] John Tomaszewski wrote: > To anyone out there, > I've just gotten started using pronto (I have it set up and > licensed on the SGIs at school and Linux at home) and need a bit of > help: > > 1) After reading in a referenced, Felix .mat file (it normalized OK, so I'm > pretty sure Pronto can read the file), and filling in the sequence, I > can't get any contours to show in the CP facility. I've used the > standard values shown in the online manual, as well as several > variations, but the CP window consistantly comes up blank. If anyone's > willing to help I can go into a lot more detail if necessary. Is this both in Linux and on the SGI's? Is the .mat file compressed? > > 2) I want to be able to share my database, as well as my Felix .mat files > between the two machines (big Endian <-> little Endian). I understand > that the database can be shared by exporting as ASCII on one machine and > importing on the other. Is there more to it? I haven't tried it yet due > to the bottleneck mentioned in 1). Also, what about the .mat file(s)? > What, if anything, must be done with those? Pronto should in general be able to convert spectra on-the-fly between the two endianness, however, there might be a problem with Felix files, this depends upon the answer of question 1. The same is not possible for the database files, unfortunately. There you would have to go the ASCII way. > > Any help would be greatly appreciated. > > Sincerely, > > John T. > > ******************************************************************** > ** ** ** ** * ** DEPARTMENT OF CHEMISTRY ** > ** ** ** ** * ** tomasz@protein.chem.washington.edu ** > ** ** ** ** * ** (206) 616-2993 ** > ** ***** ***** JOHN TOMASZEWSKI ** > ******************************************************************** Mogens -- Mogens Kjaer, Carlsberg Laboratory, Dept. of Chemistry Gamle Carlsberg Vej 10, DK-2500 Valby, Denmark Phone: +45 33 27 53 25, Fax: +45 33 27 47 08 Email: mk@crc.dk Homepage: http://www.crc.dk