Carlsberg Laboratory
NMR center
Pulse sequence library
Coupling Constants in Proteins
TROSY Experiments
Hydrogen Bond Experiments
Small Molecules
Pulse Calibration
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2CALIS for Bruker
Pulse program
Procedure
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Start with a 1D HMQC parameterset rpar HMQC1D all
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Change pulse program to
2calis
pulprog 2calis
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for 2CALIS-1 Change zgoptns to
REFOCUS
zgoptns REFOCUS
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Set up the frequencies and decoupling and default pulselengths
Change decoupler offset
o2p to the offset of the X-nucleus to be calibrated.
o2p 98
Change/set the decoupler CPD program CPDPRG2.
CPDPRG2 garp
Set the pulse lengths to default values.
getprosol
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Set up the acquisition parameters
ased
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Set
cnst2 to 142 Hz or whatever your expect coupling constant,
and cnst31 to 18 or whatever your longest pulse will be.
Set the gradients up (gpz3 is not used by 2CALIS-2)
gpz1 = 3%
gpz2 = 80%
p16 = 1 msec.
p19 = 200 usec.
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Make sure the power for the decoupling scheme is suitable for
your system.
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Set the receiever gain as appropriate for the sample
rg.
rga
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Start the experiment and keep an eye on the amplifiers and
temperature of the sample. Process and phase the resulting
spectrum.
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Perform the calibration run using for example
popt see the manual page for popt for details
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