Carlsberg Laboratory
NMR center
Pulse sequence library
Coupling Constants in Proteins
TROSY Experiments
Hydrogen Bond Experiments
Small Molecules
Pulse Calibration
Disclaimer
|
Edited H2BC for Bruker
Pulse programs
-
Multiplicity edited H2BC with third order low-pass J filter
(XWinNMR 2.6+):
h2bc_cteal3
-
Multiplicity edited H2BC
(TopSpin 1.3):
h2bc_one
AU-programs for processing
-
General split and combination of interleaved 2D-data:
splitcomb
-
General split of interleaved 2D-data:
splitil
Procedure for pulseprogram h2bc_one
-
Start with a HSQC parameterset rpar HSQCETGP all
-
Change pulse program to
h2bc_one
pulprog h2bc_one
-
Set up the acquisition parameters
ased
-
Set
cnst6 to 125 Hz, cnst8 to 165 Hz and
cnst15 to 20 ms.
-
-
For a standard H2BC-experiment:
set the ZGOPTNS
to -DSUB and L31 to 0
ZGOPTNS -DSUB; l31 0
-
For a up-down H2BC-experiment:
set the ZGOPTNS
to -DSUB and L31 to 1
ZGOPTNS -DSUB; l31 1
-
For an edited H2BC-experiment
(i.e.,standard and up-down experiments
acquierd in an interleaved mode):
leave ZGOPTNS empty
-
Adjust
sw and/or cnst15 until
the calculated parameter TD1MAX is less or equal
to the current td1
(= number of increments of t1 × 4 for the
interleaved experiments)
-
Make sure the power for the decoupling schemes is suitable for
your system.
-
Set the number of scans to ~ 4× that of a decent HSQC
on the same sample. Keep the same receiver gain.
-
Start the experiment and keep an eye on the amplifiers and
temperature of the sample.
Processing of interleaved data
-
Split and combine the dataset to two new datasets:
splitcomb 2
-
Change to the first of the two datasets:
re <expno×100+1>
-
Do two-dimesional Fourier transform
XFB
-
Phase the signals to either pure absorption
or pure dispersion.
Weak signals will benefit from the latter.
-
Process the second dataset (
<expno×100+2>) the same way with
multixfb.
-
Cross peaks generally correlates protons with
carbons two bonds away. The first dataset contains
signals from CH and CH3-groups while the second dataset
contains signals from CH2-groups.
|